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  1. In single-cell RNA sequencing (scRNA-seq) data, issues related to the high expression of non-variable RNAs often arise due to organ traits or sample quality. Computational methods, such as SoupX (Young (Gigasc...

    Authors: Dong Jun Kim, Christine Suh Yun Joh, So Young Jeong, Yong Jun Kim, Seong Joon Koh and Hyun Je Kim
    Citation: Genomics & Informatics 2025 23:14
    Content type: Research Published on:

  2. Single-cell RNA-sequencing (scRNA-seq) technology brought about a revolutionary change in the transcriptomic world, paving the way for comprehensive analysis of cellular heterogeneity in complex biological sys...

    Authors: Ankish Arya, Prabhat Tripathi, Nidhi Dubey, Imlimaong Aier and Pritish Kumar Varadwaj
    Citation: Genomics & Informatics 2025 23:13
    Content type: Review Published on:

  3. Inflammatory bowel disease (IBD) is a group of chronic inflammatory disorders, including ulcerative colitis (UC) and Crohn’s disease, affecting the gastrointestinal tract and is associated with high morbidity ...

    Authors: Pooya Jalali, Malihe Rezaee, Alireza Yaghoobi, Moein Piroozkhah, Mohammad Reza Zabihi, Shahram Aliyari and Zahra Salehi
    Citation: Genomics & Informatics 2025 23:12
    Content type: Research Published on:

  4. Deep vein thrombosis (DVT) is a clinically significant condition characterized by the formation of thrombi in deep venous structures, leading to high morbidity and potential mortality. Identifying reliable bio...

    Authors: Usi Sukorini, Gisca Ajeng Widya Ninggar, Mohammad Hendra Setia Lesmana, Lalu Irham, Wirawan Adikusuma, Hegaria Rahmawati, Nur Imma Fatimah Harahap, Chiou-Feng Lin and Rahmat Dani Satria
    Citation: Genomics & Informatics 2025 23:11
    Content type: Research Published on:

  7. Large-scale national biobank projects utilizing whole-genome sequencing have emerged as transformative resources for understanding human genetic variation and its relationship to health and disease. These init...

    Authors: Hyeji Lee, Wooheon Kim, Nahyeon Kwon, Chanhee Kim, Sungmin Kim and Joon-Yong An
    Citation: Genomics & Informatics 2025 23:8
    Content type: Review Published on:

  8. Amyotrophic lateral sclerosis (ALS) is a rare neurodegenerative disease prevalent in American and European populations, with its onset and progression significantly influenced by mutations in the superoxide di...

    Authors: Jessica Jeejan, Lawanya Rao, Shivank Sadasivan, Richa Lopes and Norine Dsouza
    Citation: Genomics & Informatics 2025 23:7
    Content type: Research Published on:

  15. Cells interact with each other for proper function and homeostasis. Often, co-expression of ligand-receptor pairs from the single-cell RNAseq (scRNAseq) has been used to identify interacting cell types. Recent...

    Authors: Linbu Liao, Junyoung Kim, Kanghee Cho, Junil Kim, Byung-Kwan Lim and Kyoung Jae Won
    Citation: Genomics & Informatics 2024 22:30
    Content type: Methodology Published on:

  16. In protein identification, researchers increasingly aim to achieve efficient classification using fewer features. While many feature selection methods effectively reduce the number of model features, they ofte...

    Authors: Chaolu Meng, Yongqi Hou, Quan Zou, Lei Shi, Xi Su and Ying Ju
    Citation: Genomics & Informatics 2024 22:29
    Content type: Research Published on:

  17. Rare diseases, though individually uncommon, collectively affect millions worldwide. Genomic technologies and big data analytics have revolutionized diagnosing and understanding these conditions. This review e...

    Authors: Juhyeon Hong, Dajun Lee, Ayoung Hwang, Taekeun Kim, Hong-Yeoul Ryu and Jungmin Choi
    Citation: Genomics & Informatics 2024 22:28
    Content type: Review Published on:

  19. Vibrio vulnificus, a gram-negative pathogenic bacterium, transmitted via undercooked seafood or contaminated seawater, causes septicemia and wound infections. In this study, we analyzed 15 clinical and 11 environ...

    Authors: Jinkyeong Lee, Jeong-Ih Shin, Woo Young Cho, Kun Taek Park, Yeun-Jun Chung and Seung-Hyun Jung
    Citation: Genomics & Informatics 2024 22:26
    Content type: Research Published on:

  20. The untranslated regions (UTRs) of genes significantly impact various biological processes, including transcription, posttranscriptional control, mRNA stability, localization, and translation efficiency. In fu...

    Authors: Aruna Sesha Chandrika Gummadi, Divya Kumari Muppa and Venakata Rajesh Yella
    Citation: Genomics & Informatics 2024 22:25
    Content type: Brief Report Published on:

  21. Neuromuscular diseases (NMDs) are a group of rare disorders characterized by significant genetic and clinical complexity. Advances in genomics have revolutionized both the diagnosis and treatment of NMDs. Whil...

    Authors: Anna Cho
    Citation: Genomics & Informatics 2024 22:24
    Content type: Review Published on:

  22. The Human Phenotype Ontology (HPO) is widely used for annotating clinical text data, and sufficient annotation is crucial for the effective utilization of clinical texts. It was known that the use of LLMs can ...

    Authors: Eisuke Dohi, Terue Takatsuki, Yuka Tateisi, Toyofumi Fujiwara and Yasunori Yamamoto
    Citation: Genomics & Informatics 2024 22:23
    Content type: Brief Report Published on:

  32. Antibiotic resistance poses a pressing and crucial global public health challenge, leading to significant clinical and health-related consequences. Substantial evidence highlights the pivotal involvement of ri...

    Authors: Mohammad Reza Arabestani, Masoumeh Saadat and Amir Taherkhani
    Citation: Genomics & Informatics 2024 22:13
    Content type: Research Published on:

  33. Over hundreds of years, cats have been domesticated and selectively bred, resulting in numerous pedigreed breeds expedited by recent cat shows and breeding associations. Concerns have been raised about the lim...

    Authors: Wattanawan Jaito, Worapong Singchat, Chananya Patta, Chadaphon Thatukan, Nichakorn Kumnan, Piangjai Chalermwong, Trifan Budi, Thitipong Panthum, Wongsathit Wongloet, Pish Wattanadilokchatkun, Thanyapat Thong, Narongrit Muangmai, Kyudong Han, Prateep Duengkae, Rattanin Phatcharakullawarawat and Kornsorn Srikulnath
    Citation: Genomics & Informatics 2024 22:12
    Content type: Research Published on:

  34. Variable surface antigens (VSAs) encoded by var and vir genes in Plasmodium falciparum and Plasmodium vivax, respectively, are known to be involved in malaria pathogenesis and host immune escape through antigenic...

    Authors: Joseph Hawadak, Aditi Arya, Shewta Chaudhry and Vineeta Singh
    Citation: Genomics & Informatics 2024 22:11
    Content type: Research Published on:

  35. Autoimmune disorders (ADs) are chronic conditions resulting from failure or breakdown of immunological tolerance, resulting in the host immune system attacking its cells or tissues. Recent studies report share...

    Authors: Aruna Rajalingam and Anjali Ganjiwale
    Citation: Genomics & Informatics 2024 22:10
    Content type: Research Published on:

  37. Though genes are already known to be responsible for type 1 diabetes mellitus (T1DM), the knowledge of missense mutation of that disease gene has still to be under covered. A genomic database and a bioinformat...

    Authors: Dyonisa Nasirochmi Pakha, Ratih Dewi Yudhani and Lalu Muhammad Irham
    Citation: Genomics & Informatics 2024 22:8
    Content type: Research Published on:

  39. Here, we investigated that the heat shock protein 47 (HSP47) plays a crucial role in the progression of gastric cancer (GC). We analyzed HSP47 gene expression in GC cell lines and patient tissues. The HSP47 mR...

    Authors: Jieun Lee, Jung-Ah Hwang, Seung-Hyun Hong, Seon-Young Kim, Donghyeok Seol, Il Ju Choi and Yeon-Su Lee
    Citation: Genomics & Informatics 2024 22:6
    Content type: Research Published on:

  40. During the third year of the pandemic in Peru, the persistent transmission of SARS-CoV-2 led to the appearance of more transmissible and immune-evasive Omicron sublineages; in that context, the National Genomi...

    Authors: Victor Jimenez-Vasquez, Natalia Vargas-Herrera, Luis Bárcena-Flores, Verónica Hurtado, Carlos Padilla-Rojas and Roger V. Araujo-Castillo
    Citation: Genomics & Informatics 2024 22:5
    Content type: Research Published on:

  41. Tumor suppressor cylindromatosis protein (CYLD) regulates NF-κB and JNK signaling pathways by cleaving K63-linked poly-ubiquitin chain from its substrate molecules and thus preventing the progression of tumori...

    Authors: Arpita Singha Roy, Tasmiah Feroz, Md. Kobirul Islam, Md. Adnan Munim, Dilara Akhter Supti, Nusrat Jahan Antora, Hasan Al Reza, Supriya Gosh, Newaz Mohammed Bahadur, Mohammad Rahanur Alam and Md Shahadat Hossain
    Citation: Genomics & Informatics 2024 22:4
    Content type: Research Published on:

  42. Caenorhabditis elegans (C. elegans) is a nematode and model organism whose entire genome has been mapped, which allows for easy observation of the organism’s development due to its transparent structure, and whic...

    Authors: Şeyda Berk, Serkan Özdemir and Ayşe Nur Pektaş
    Citation: Genomics & Informatics 2024 22:3
    Content type: Research Published on:

  43. Small auxin-up RNA (SAUR) proteins were known as a large family that supposedly participated in various biological processes in higher plant species. However, the SAUR family has been still not explored in cac...

    Authors: Ngoc Thi Bich Chu, Man Thi Le, Hong Viet La, Quynh Thi Ngoc Le, Thao Duc Le, Huyen Thi Thanh Tran, Lan Thi Mai Tran, Chi Toan Le, Dung Viet Nguyen, Phi Bang Cao and Ha Duc Chu
    Citation: Genomics & Informatics 2024 22:2
    Content type: Research Published on:

  44. The goal of the study was to investigate the changes in the gut microbiota during the advancement of gastric cancer (GC) and identify pertinent taxa associated with the disease. We used a public fecal amplicon...

    Authors: Anju R. Nath and Jeyakumar Natarajan
    Citation: Genomics & Informatics 2024 22:1
    Content type: Research Published on:
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